Current — m-ski lab

Selected Publications

Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers

Most large structural variants in cancer genomes can be detected without long reads

Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing

Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway.

Structural variant evolution after telomere crisis.

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.

Loose ends in cancer genome structure

Impact of Lineage Plasticity to and from a Neuroendocrine Phenotype on Progression and Response in Prostate and Lung Cancers

Patterns of somatic structural variation in human cancer genomes.

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Robust foreground detection in somatic copy number data

Prostate cancer: Clinical hallmarks in whole cancer genomes.

SvABA: genome-wide detection of structural variants and indels by local assembly.

Insertions and Deletions Target Lineage-Defining Genes in Human Cancers

Modeling cancer rearrangement landscapes.

Selected Publications

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